Cellprofiler save movie not working6/27/2023 ![]() MySQL is open-source software you may require help from MySQL: Writes the data directly to a MySQLĭatabase.Specify the type of database you want to use: Mysql -h hostname -u username -p databasename General Help > How Measurements Are Named. At the secure shell where you normally log in to MySQL, type the following, replacing the italics with references to your database and files: This option will output a SQL file (regardless of whether you choose to write directly to the database) that can be used to create the Per_Well table. If you have extracted "Plate" and "Well" metadata from image filenames or loaded "Plate" and "Well" metadata via the Metadata or LoadData modules, you can ask CellProfiler to create a "Per_Well" table, which aggregates object measurements across wells. If this one-to-one correspondence is not the case for all objects in the pipeline (for example, if dozens of speckles are identified and measured for each nucleus), then you must configure ExportToDatabase to export only objects that maintain the one-to-one correspondence (for example, export only Nucleus and Cytoplasm, but omit Speckles). For example, in most pipelines, each nucleus has exactly one cytoplasm, so the first row of the Per-Object table contains all of the information about object #1, including both nucleus- and cytoplasm-related measurements. Typically, if multiple types of objects are identified and measured in a pipeline, the numbers of those objects are equal to each other. The Per_Object table has another primary key called ObjectNumber, which is unique to each image. ![]() The two tables are connected with the primary key column ImageNumber, which indicates the image to which each object belongs. There is one row of object measurements per object identified.
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